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After the challenges Link had to face, he is later reunited with Kafei and Skull Kid (Stal Kid). AS for Kafei, bits of his memory has been lost due to an earlier fight with a dark figure, this had been further explained by Skull Kid himself who tells Link of about Sakon and what they had to face within the depths of The Clock Tower.
The two were quickly introduced to Gemmy and others accompanying Link on his journey and further explained the purpose of it. The group boarded a ship that is soon on it's way to the desert, The Soli'Dad Province.